Dr. Charles Agoti


Prof. James Nokes

Charles Agoti is a Mid Career Research Fellow (MCRF) under the IDeAL Programme. Prior receiving the fellowship Charles was working as Postdoctoral Bioinformacian with the Virus Epidemiology and Control (VEC) group within the KEMRI-Wellcome Trust Kilifi Programme. For more than 10 years,

Charles’ primary focus was generating and analyzing respiratory virus genomes to improve understanding on the underlying transmission and evolutionary patterns that allow persistence of these pathogens in host populations. Charles has made significant contributions into the understanding of the nature and variant composition of local seasonal respiratory syncytial virus (RSV, a leading cause of childhood pneumonia) epidemics and the role of genetic variation in RSV repeat infections.

The IDeAL MCRF supports Charles to extend this transmission genomics work to medically important enteric viruses. Specifically, Charles will be investigating viral diarrhea genomics pre and post-rotavirus vaccination in Kenya to understand virus source, transmission patterns and vaccine impact.